Find web services developed by the Aebersold lab below. Please find the main lab web page here
xQuest: discover crosslinks, xQuest webserver application
xQuest/xProphet: Software for the analysis of cross-linked peptides.
xTract: Software for the quantification of cross-linked peptides.
Xwalk: Prediction, Validation and Visualisation of Chemical Cross-Links
Mayu: Protein Identification False Discovery Rates
SRMCollider: Prediction of Interferences in SRM
OpenSWATH: Analysis of SWATH / DIA mass spectrometric data
TRIC: TRIC alignment tool for targeted proteomics.
findMF: find molecular features - methods for feature detection in 1D and 2 D qTOF MS data.
Protter: The open-source tool for interactive integration and visualization of annotated and predicted protein sequence features together with experimental proteomic evidence!
TAPIR: TAPIR, a fast and efficient Python visualization software for chromatograms and peaks identified in targeted proteomics experiments.
PerLudUm: Toprak, U. H., et al. (2014). "Conserved peptide fragmentation as a benchmarking tool for mass spectrometers and a discriminating feature for targeted proteomics." Mol Cell Proteomics 13(8): 2056-2071. Access paper
SWATH2stats: SWATH2stats is an R/Bioconductor package to process and convert quantitative SWATH-MS proteomics data for downstream analysis tools
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